EMBnet Norway

MRS DATABASES

MRS is the new database sequence search application for EMBnet Norway. You can access it here.

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Public FTP Server

You can get selected raw files from our public FTP server by command line: ftp ftp.no.embnet.org (username: ftp password: your email address). You can also point your web browser to ftp://ftp.no.embnet.org , in order to browse the available datasets, using the same username and password. However, due to the size of the files, if you wish to get a file(s), remember to right click and 'Save As' instead of just left clicking.

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EMBOSS DATABASES

Note: EMBOSS and BLAST databases are located now only on cnkeeper.uio.no

Name	Type	ID	Qry	All	Comment
sprot	P	OK	OK	OK	UniProtKB/Swiss-Prot Latest Release
trembl	P	OK	OK	OK	UniProtKB/TrEMBL Latest Release
con	N	OK	OK	OK	EMBL 112 CONSTRUCTED sequences
emblnew	N	OK	OK	OK	New EMBL sequences since release 112(base 105) -- weekly update
env	N	OK	OK	OK	EMBL 112 STANDARD ENVIRONMENTAL sequences
estenv	N	OK	OK	OK	EMBL 112 STANDARD EST ENVIRONMENTAL sequences
estfun	N	OK	OK	OK	EMBL 112 STANDARD EST FUNGAL sequences
esthum	N	OK	OK	OK	EMBL 112 STANDARD EST HUMAN sequences
estinv	N	OK	OK	OK	EMBL 112 STANDARD EST INVERTEBRATE sequences
estmam	N	OK	OK	OK	EMBL 112 STANDARD EST MAMMALIAN sequences
estmus	N	OK	OK	OK	EMBL 112 STANDARD EST MUS MUSCULUS sequences
estpln	N	OK	OK	OK	EMBL 112 STANDARD EST PLANT sequences
gss	N	OK	OK	OK	EMBL 112 GSS sequences
htc	N	OK	OK	OK	EMBL 112 STANDARD High Throughput cDNA (HTC) sequences
htgenv	N	OK	OK	OK	EMBL 112 High Throughput Genome (HTG) ENVIRONMENTAL sequences
htgfun	N	OK	OK	OK	EMBL 112 High Throughput Genome (HTG) FUNGAL sequences
htghum	N	OK	OK	OK	EMBL 112 High Throughput Genome (HTG) HUMAN sequences
htginv	N	OK	OK	OK	EMBL 112 High Throughput Genome (HTG) INVERTEBRATE sequences
htgmam	N	OK	OK	OK	EMBL 112 High Throughput Genome (HTG) OTHER MAMMAL sequences
htgmus	N	OK	OK	OK	EMBL 112 High Throughput Genome (HTG) MUS MUSCULUS sequences
htgphg	N	OK	OK	OK	EMBL 112 High Throughput Genome (HTG) PHAGE sequences
htgpln	N	OK	OK	OK	EMBL 112 High Throughput Genome (HTG) PLANT sequences
htgpro	N	OK	OK	OK	EMBL 112 High Throughput Genome (HTG) PROKARYOTE sequences
htgrod	N	OK	OK	OK	EMBL 112 High Throughput Genome (HTG) RODENT sequences
htgvrl	N	OK	OK	OK	EMBL 112 High Throughput Genome (HTG) VIRAL sequences
htgvrt	N	OK	OK	OK	EMBL 112 High Throughput Genome (HTG) VERTEBRATE sequences
human	N	OK	OK	OK	EMBL 112 STANDARD human sequences
inv	N	OK	OK	OK	EMBL 112 STANDARD Invertebrate Sequences
mammal	N	OK	OK	OK	EMBL 112 STANDARD other mammal sequences
mus	N	OK	OK	OK	EMBL 112 STANDARD mus musculus sequences
phg	N	OK	OK	OK	EMBL 112 STANDARD Bacteriophage Sequences
plants	N	OK	OK	OK	EMBL 112 STANDARD plant sequences
prokaryotic	N	OK	OK	OK	EMBL 112 STANDARD prokaryotic sequences
rodent	N	OK	OK	OK	EMBL 112 STANDARD rodent sequences
sts	N	OK	OK	OK	EMBL 112 STANDARD STS sequences
viral	N	OK	OK	OK	EMBL 112 STANDARD viral sequences
wgsenv	N	OK	OK	OK	EMBL 112 environmental sample Whole Genome Shotgun (WGS) sequences
wgshum	N	OK	OK	OK	EMBL 112 human Whole Genome Shotgun (WGS) sequences
wgsinv	N	OK	OK	OK	EMBL 112 invertebrate Whole Genome Shotgun (WGS) sequences
wgsmam	N	OK	OK	OK	EMBL 112 mammal Whole Genome Shotgun (WGS) sequences
wgsmus	N	OK	OK	OK	EMBL 112 mus musculus Whole Genome Shotgun (WGS) sequences
wgspln	N	OK	OK	OK	EMBL 112 plant Whole Genome Shotgun (WGS) sequences
wgspro	N	OK	OK	OK	EMBL 112 prokaryotic Whole Genome Shotgun (WGS) sequences
wgsrod	N	OK	OK	OK	EMBL 112 rodent Whole Genome Shotgun (WGS) sequences
wgsvrt	N	OK	OK	OK	EMBL 112 vertebrate Whole Genome Shotgun (WGS) sequences

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NCBI Formatted (BLAST) Databases

Note: Some of the database sets are not available on wwwblast due to the size of the data set. These large data sets are available on NCBI Blast only through the command line interface to registered users.

Name	Type	on wwwblast	Comment
emblnew	nucleotide	yes	New EMBL sequences since release 112 -- daily update
human_genomic	nucleotide	yes	human RefSeq chromosome records with gap adjusted concatenated NT_ contigs
nt	nucleotide	yes	entries from all traditional divisions of GenBank, EMBL, and DDBJ excluding bulk divisions (gss, sts, pat, est, htg divisions) and wgs entries.
refseq_genomic	nucleotide	no	Genomic NCBI Reference Sequences
refseq_rna	nucleotide	no	RNA NCBI Reference Sequences
refseq_protein	protein	no	Protein NCBI Reference sequences
swissprot	protein	yes	UniProtKB/Swiss-Prot
nr	protein	yes	non-redundant protein sequence database with entries from GenPept, Swissprot, PIR, PDF, PDB, and RefSeq
trembl	protein	no	UniProtKB/TrEMBL

Last NCBI BLAST Update: 02/08/2012

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