EMBnet Norway EMBnet Norway EMBnet Norway |
GCG Program |
Direct Alternative |
Partial Alternative |
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ASSEMBLE |
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BACKTRANSLATE |
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BESTFIT |
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BLAST |
BLAST package |
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BREAKUP |
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CHOPUP |
Not needed | |
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CODONFREQUENCY |
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CODONPREFERENCE |
syco, wobble | |
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COILSCAN |
pepcoil | |
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COMPARE |
dottup, dotmatcher | |
| COMPOSITION | compseq, pepstats | |
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COMPRESSTEXT |
shell script |
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COMPTABLE |
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CONSENSUS |
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CORRESPOND |
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CORRUPT |
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DATASET |
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DETAB |
shell tools |
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DISTANCES |
PHYLIP package |
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DIVERGE |
PHYLIP package |
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DOTPLOT |
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EXTRACTPEPTIDE |
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FASTA |
FASTA package |
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FASTX |
FASTA package |
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FETCH |
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FIGURE |
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FINDPATTERNS |
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FINGERPRINT |
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FRAMEALIGN |
wise2 |
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FRAMES |
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FRAMESEARCH |
wise2 |
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FROM* |
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GAP |
needle |
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GAPSHOW |
plotcon | |
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GCGTOBLAST |
seqretall/BLAST package |
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GEL* |
Staden | MSE |
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GETSEQ |
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GROWTREE |
PHYLIP package, clustal |
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HELICALWHEEL |
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HTHSCAN |
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ISOELECTRIC |
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LINEUP |
mse |
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LISTFILE |
gnu utils |
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LOOKUP |
srs |
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LPRINT |
gnu utils |
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MAP |
,remap | |
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MAPPLOT |
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MAPSORT |
restrict | |
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MEME |
pratt |
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MFOLD |
mfold |
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MOMENT |
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MOTIFS |
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MOTIFSEARCH |
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NAME |
Not required | setenv |
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NAMES |
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NETBLAST |
BLAST package |
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NETFETCH |
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NOOVERLAP |
diffseq | |
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OLDDISTANCES |
clustal/PHYLIP package |
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ONECASE |
shell |
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OVERLAP |
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PAUPDISPLAY |
paup package |
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PAUPSEARCH |
paup package |
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PEPDATA |
getorf |
shell and emboss |
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PEPPLOT |
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PEPTIDEMAP |
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PEPTIDESORT |
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PILEUP |
clustal |
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PLASMIDMAP |
lindna | |
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PLOTFOLD |
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PLOTSIMILARITY |
plotcon | |
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PLOTSTRUCTURE |
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PLOTTEST |
Not needed | |
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PRETTY |
cons,prettyplot | |
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PRETTYBOX |
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PRIME |
prima |
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PROFILEGAP |
clustal, prophet |
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PROFILEMAKE |
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PROFILESCAN |
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PROFILESEARCH |
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PROFILESEGMENTS |
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PUBLISH |
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RED |
tex |
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REFORMAT |
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REPEAT |
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REPLACE |
sed |
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REVERSE |
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SAMPLE |
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SEG |
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SEGMENTS |
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SEQED |
mse |
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SEQLAB |
disGUIse |
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SETKEYS |
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SHIFTOVER |
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SHUFFLE |
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SIMPLIFY |
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SPEW |
linux |
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SPSCAN |
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SSEARCH |
FASTA package |
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STATPLOT |
gnuplot | |
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STEMLOOP |
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STRINGSEARCH |
textsearch, srs |
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SYMBOL |
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TERMINATOR |
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TESTCODE |
wobble | |
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TFASTA |
FASTA package |
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TFASTX |
FASTA package |
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TO* |
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TRANSLATE |
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WINDOW |
freak | |
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WORDSEARCH |
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XNU |
xnu |